Stem-loop hco-mir-5894a

Accession

MI0020010

Description

Haemonchus contortus hco-mir-5894a precursor miRNA

Literature search

1 open access papers mention hco-mir-5894a
(1 sentences)

Sequence

2059 reads, 18.0 reads per million, 21 experiments

cagaaaaaguaagugugguaagCCUAUAUCUGAUGGUGUAGCGGGAauucucgucuCGCUACACCAUCAGUUAUGGACUuggcuaccuuauaacuaaugug
........(((((.((((((((.(((((.(((((((((((((((((.......))))))))))))))))).))))).))).))))))))))..........

Structure

--cagaaaaa     u     -   C     U                 au 
          guaag guggu aag CUAUA CUGAUGGUGUAGCGGGA  u
          ||||| ||||| ||| ||||| |||||||||||||||||  c
          uauuc caucg uUC GGUAU GACUACCACAUCGCucu  u
guguaaucaa     -     g   A     U                 gc 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5894a-5p

• Accession: MIMAT0023334
• Description: Haemonchus contortus hco-miR-5894a-5p mature miRNA
• Sequence: 23 - CCUAUAUCUGAUGGUGUAGCGGGA - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5894a-3p

• Accession: MIMAT0057940
• Description: Haemonchus contortus hco-miR-5894a-3p mature miRNA
• Sequence: 57 - CGCUACACCAUCAGUUAUGGACU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4