Stem-loop hco-mir-43

Accession

MI0020012

Description

Haemonchus contortus hco-mir-43 precursor miRNA

Literature search

1 open access papers mention hco-mir-43
(12 sentences)

Sequence

1728155 reads, 14496.0 reads per million, 21 experiments

acuuauucgcugaucuucuugcAACCCGAUGUAGCUGUUAUACUgccucguuguaagUAUCACAGUGUCAUUGGGUCGCAagcgaucucagcuugcauugaccc
........(((((..(((((((.((((((((..(((((.(((((((......)).))))).)))))..)))))))).))))).))..)))))............

Structure

----acuuauuc     uc  -     A        UA     U     -  cu 
            gcuga  uu cuugc ACCCGAUG  GCUGU AUACU gc  c
            |||||  || ||||| ||||||||  ||||| ||||| ||   
            cgacu  ag gaACG UGGGUUAC  UGACA UAUga ug  g
cccaguuacguu     cu  c     C        UG     C     a  uu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-43-5p

• Accession: MIMAT0057942
• Description: Haemonchus contortus hco-miR-43-5p mature miRNA
• Sequence: 23 - AACCCGAUGUAGCUGUUAUACU - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-43-3p

• Accession: MIMAT0023336
• Description: Haemonchus contortus hco-miR-43-3p mature miRNA
• Sequence: 58 - UAUCACAGUGUCAUUGGGUCGCA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4