Stem-loop hco-mir-45

Accession

MI0020015

Description

Haemonchus contortus hco-mir-45 precursor miRNA

Literature search

2 open access papers mention hco-mir-45
(2 sentences)

Sequence

3221870 reads, 22324.0 reads per million, 21 experiments

caccucagucaccauuguccgauCUGGAUGUUUCUCUGAGUCAUAcucguugugauaUGACUAGAGACACAUUCAGCUuggcuacgugaccauaucguggcua
(((....(((((....(.((((.((((((((.(((((.(((((((.((.....)))))))))))))).)))))))).)))))...)))))......)))....

Structure

----   --cuca     cauu u    u        U     G       c  g 
    cac      gucac    g ccga CUGGAUGU UCUCU AGUCAUA uc u
    |||      |||||    | |||| |||||||| ||||| ||||||| || u
    gug      cagug    c gguU GACUUACA AGAGA UCAGUau ag g
aucg   cuauac     -cau -    C        C     -       -  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-45-5p

• Accession: MIMAT0057945
• Description: Haemonchus contortus hco-miR-45-5p mature miRNA
• Sequence: 24 - CUGGAUGUUUCUCUGAGUCAUA - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-45-3p

• Accession: MIMAT0023339
• Description: Haemonchus contortus hco-miR-45-3p mature miRNA
• Sequence: 58 - UGACUAGAGACACAUUCAGCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4