Stem-loop hco-mir-5896

Accession

MI0020016

Description

Haemonchus contortus hco-mir-5896 precursor miRNA

Sequence

cacccauauggaugcgucgguuAUGGGCAAUGUGUCCUGUUCAGAccgcacggaucuggcaggcacguuguucaauacagacaauccacugcucuuccu
........(((((..(((.((..(((((((((((.(((((.((((((....)).))))))))))))))))))))..)).))).)))))...........

Structure

---cacccaua     gc   g  uA           U     U    -  g 
           uggau  guc gu  UGGGCAAUGUG CCUGU CAGA cc c
           |||||  ||| ||  ||||||||||| ||||| |||| ||  
           accua  cag ca  acuuguugcac ggacg gucu gg a
uccuucucguc     -a   a  ua           -     -    a  c 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5896

• Accession: MIMAT0023340
• Description: Haemonchus contortus hco-miR-5896 mature miRNA
• Sequence: 23 - AUGGGCAAUGUGUCCUGUUCAGA - 45
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4