Stem-loop hco-mir-5897a

Accession

MI0020017

Description

Haemonchus contortus hco-mir-5897a precursor miRNA

Sequence

61664 reads, 526.0 reads per million, 21 experiments

uggucaagugagcggcugucauCUCUAGAUGGUUGUACAAAGUCccauaugggaggUUUUGUAUAACUCUUCUAGAAAUgauuugcuccuugagagacaccu
...(((((.((((((..(((((.((((((.((((((((((((((((....))))..))))))))))))..)))))).)))))))))))))))).........

Structure

------ugg     u      cu     C      -U            --    a 
         ucaag gagcgg  gucau UCUAGA  GGUUGUACAAAG  UCcc u
         ||||| ||||||  ||||| ||||||  ||||||||||||  ||||  
         aguuc cucguu  uagUA AGAUCU  UCAAUAUGUUUU  aggg a
uccacagag     -      --     A      UC            gg    u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5897a-5p

• Accession: MIMAT0057946
• Description: Haemonchus contortus hco-miR-5897a-5p mature miRNA
• Sequence: 23 - CUCUAGAUGGUUGUACAAAGUC - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5897a-3p

• Accession: MIMAT0023341
• Description: Haemonchus contortus hco-miR-5897a-3p mature miRNA
• Sequence: 57 - UUUUGUAUAACUCUUCUAGAAAU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4