Stem-loop hco-mir-5901

Accession

MI0020026

Description

Haemonchus contortus hco-mir-5901 precursor miRNA

Sequence

704 reads, 8.0 reads per million, 21 experiments

uaguguaguucacauagcagugAUUCACUCCUUCUGACCAUAGCgcuguuggacgUUAUGGUCAGAAGGAGUGAACUAcgacuccugugacuaugccagu
..(((((((.((((.((..(((.((((((((((((((((((((((((...)).)))))))))))))))))))))).)))..))..)))))))))))....

Structure

--ua       u    -u  ca   A                      -  g 
    guguagu caca  ag  gug UUCACUCCUUCUGACCAUAGCg cu  
    ||||||| ||||  ||  ||| |||||||||||||||||||||| || u
    cguauca gugu  uc  cAU AAGUGAGGAAGACUGGUAUUgc gg  
ugac       -    cc  ag   C                      a  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5901-5p

• Accession: MIMAT0057954
• Description: Haemonchus contortus hco-miR-5901-5p mature miRNA
• Sequence: 23 - AUUCACUCCUUCUGACCAUAGC - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5901-3p

• Accession: MIMAT0023351
• Description: Haemonchus contortus hco-miR-5901-3p mature miRNA
• Sequence: 56 - UUAUGGUCAGAAGGAGUGAACUA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4