Stem-loop hco-mir-5903

Accession

MI0020028

Description

Haemonchus contortus hco-mir-5903 precursor miRNA

Sequence

auucaauaaaacacagagagugcgacaccguucagauguuuuugucuccaguacaaugugauugUACCGGGAUAUGGAACGUCUGAAuggggucguacguuacccagacg
...................(((((((.(((((((((((((((((((.((.(((((((...))))))).)))))).))))))))))))))).)))))))............

Structure

auucaauaaaacacagaga       a               -    u  a       g 
                   gugcgac ccguucagauguuuu uguc cc guacaau  
                   ||||||| ||||||||||||||| |||| || ||||||| u
                   caugcug gguAAGUCUGCAAGG AUAG GG CAUguua  
-------gcagacccauug       g               U    -  C       g 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5903

• Accession: MIMAT0023354
• Description: Haemonchus contortus hco-miR-5903 mature miRNA
• Sequence: 65 - UACCGGGAUAUGGAACGUCUGAA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4