Stem-loop hco-mir-83

Accession

MI0020029

Description

Haemonchus contortus hco-mir-83 precursor miRNA

Literature search

1 open access papers mention hco-mir-83
(1 sentences)

Sequence

380643 reads, 4111.0 reads per million, 21 experiments

cccucuauugaugagugauagucCUGAAUUUAUUUGCGAGCUGGAcaaugaaaagaucUAGCACCAUGUAAAUUCAGCAuuugagcucgucucacuugguuucc
.((......(((((((...(((.((((((((((.((.(.(((((((........).)))))).))).)))))))))).)))...)))))))......)).....

Structure

----c  ucuauu       gau   c          U  C A      - aau 
     cc      gaugagu   agu CUGAAUUUAU UG G GCUGGA c   g
     ||      |||||||   ||| |||||||||| || | |||||| |    
     gg      cugcucg   uuA GACUUAAAUG AC C CGAUcu g   a
ccuuu  uucacu       agu   C          U  - A      a aaa 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-83-5p

• Accession: MIMAT0057955
• Description: Haemonchus contortus hco-miR-83-5p mature miRNA
• Sequence: 24 - CUGAAUUUAUUUGCGAGCUGGA - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-83-3p

• Accession: MIMAT0023355
• Description: Haemonchus contortus hco-miR-83-3p mature miRNA
• Sequence: 59 - UAGCACCAUGUAAAUUCAGCA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4