Stem-loop hco-mir-5906

Accession

MI0020034

Description

Haemonchus contortus hco-mir-5906 precursor miRNA

Sequence

1748 reads, 13.0 reads per million, 18 experiments

ccccuaacguccugguccugguUGGCAAUGAGCUAGCUAAUUGUUccaacggccaaCAUUAGCUGGUCUAUUGCCAGccuguaccucgacauccuggccu
..((....(((..(((.(.(((((((((((.((((((((((.(((.........))))))))))))).))))))))))).).)))..))).....))...

Structure

-cc  -uaac   cu   c u           A          U   cca 
   cc     guc  ggu c gguUGGCAAUG GCUAGCUAAU GUU   a
   ||     |||  ||| | ||||||||||| |||||||||| |||   c
   gg     cag  cca g ccGACCGUUAU UGGUCGAUUA Caa   g
ucc  uccua   cu   u u           C          -   ccg 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5906-5p

• Accession: MIMAT0023360
• Description: Haemonchus contortus hco-miR-5906-5p mature miRNA
• Sequence: 23 - UGGCAAUGAGCUAGCUAAUUGUU - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5906-3p

• Accession: MIMAT0057960
• Description: Haemonchus contortus hco-miR-5906-3p mature miRNA
• Sequence: 57 - CAUUAGCUGGUCUAUUGCCAG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4