Stem-loop hco-mir-5908

Accession

MI0020036

Description

Haemonchus contortus hco-mir-5908 precursor miRNA

Literature search

1 open access papers mention hco-mir-5908
(1 sentences)

Sequence

304555 reads, 4933.0 reads per million, 21 experiments

agucccagcguucagucuaaugcGAUGAUUGUGCACUGGUGAGGUAcgaaugguacUUCAUCAGGCCUCAGUCAUCUACauucgacugaacuucgcuucaugcaga
.........((((((((.((((.((((((((.((.((((((((((((.....))))))))))))))..))))))))..)))).))))))))...((.....))...

Structure

------agucccagc        u    -c        -U  A            g 
               guucaguc aaug  GAUGAUUG  GC CUGGUGAGGUAc a
               |||||||| ||||  ||||||||  || |||||||||||| a
               caagucag uuaC  CUACUGAC  CG GACUACUUcaug u
agacguacuucgcuu        c    AU        UC  -            g 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5908-5p

• Accession: MIMAT0023362
• Description: Haemonchus contortus hco-miR-5908-5p mature miRNA
• Sequence: 24 - GAUGAUUGUGCACUGGUGAGGUA - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5908-3p

• Accession: MIMAT0023363
• Description: Haemonchus contortus hco-miR-5908-3p mature miRNA
• Sequence: 57 - UUCAUCAGGCCUCAGUCAUCUAC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4