Stem-loop hco-mir-252

Accession

MI0020044

Description

Haemonchus contortus hco-mir-252 precursor miRNA

Literature search

2 open access papers mention hco-mir-252
(7 sentences)

Sequence

58473 reads, 440.0 reads per million, 21 experiments

uuugcaagugCUAAGUAGUGGUGCCGCAGGUAACcuguaugcgauUACCUGCCGCCUGCUGCUUACCauuuguacg
..((((((((.((((((((((.((.((((((((((.....).).)))))))).)))))))))))).))))))))..

Structure

uu        C          U  C        - - u 
  ugcaagug UAAGUAGUGG GC GCAGGUAA C c g
  |||||||| |||||||||| || |||||||| | | u
  auguuuaC AUUCGUCGUC CG CGUCCAUu g g a
gc        C          -  C        a c u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-252-5p

• Accession: MIMAT0023372
• Description: Haemonchus contortus hco-miR-252-5p mature miRNA
• Sequence: 11 - CUAAGUAGUGGUGCCGCAGGUAAC - 34
• Evidence: experimental ; Illumina [1]

Mature hco-miR-252-3p

• Accession: MIMAT0057966
• Description: Haemonchus contortus hco-miR-252-3p mature miRNA
• Sequence: 46 - UACCUGCCGCCUGCUGCUUACC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4