Stem-loop hco-mir-236

Accession

MI0020051

Description

Haemonchus contortus hco-mir-236 precursor miRNA

Literature search

3 open access papers mention hco-mir-236
(8 sentences)

Sequence

151715 reads, 1700.0 reads per million, 21 experiments

ucuguccgacuggCGUCUUACCUGGGCAAUAUUAGAggcuuaguucuguCUAAUACUGUCAGGUAAUGAUGCuagucgacag
.(((((.((((((((((((((((((.((.(((((((.(........).))))))).)))))))))).)))))))))))))))

Structure

u     c          -        G  A       g cuu 
 cuguc gacuggCGUC UUACCUGG CA UAUUAGA g   a
 ||||| |||||||||| |||||||| || ||||||| |    
 gacag cugauCGUAG AAUGGACU GU AUAAUCu u   g
-     -          U        -  C       g cuu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-236-5p

• Accession: MIMAT0057970
• Description: Haemonchus contortus hco-miR-236-5p mature miRNA
• Sequence: 14 - CGUCUUACCUGGGCAAUAUUAGA - 36
• Evidence: experimental ; Illumina [1]

Mature hco-miR-236-3p

• Accession: MIMAT0023379
• Description: Haemonchus contortus hco-miR-236-3p mature miRNA
• Sequence: 50 - CUAAUACUGUCAGGUAAUGAUGC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4