Stem-loop hco-mir-5914

Accession

MI0020055

Description

Haemonchus contortus hco-mir-5914 precursor miRNA

Sequence

712 reads, 6.0 reads per million, 18 experiments

uuguaacgcgccacuuagcacuguucgaccUCCGCCCAUGCUCCAGUUACUauuaugacagcaaaUAGUGACUAGCAUAGGCAGAGGuggagcaguuacaaugaucauuc
(((((((((........))..(((((.(((((.(((.(((((..((((((((((.((....))))))))))))))))).))).))))).)))))))))))).........

Structure

---------       gcgccacuuagcac     g     C   C     CC          a  a 
         uuguaac              uguuc accUC GCC AUGCU  AGUUACUauu ug c
         |||||||              ||||| ||||| ||| |||||  |||||||||| ||  
         aacauug              acgag uGGAG CGG UACGA  UCAGUGAUaa ac a
cuuacuagu       --------------     g     A   A     --          -  g 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5914-5p

• Accession: MIMAT0057972
• Description: Haemonchus contortus hco-miR-5914-5p mature miRNA
• Sequence: 31 - UCCGCCCAUGCUCCAGUUACU - 51
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5914-3p

• Accession: MIMAT0023383
• Description: Haemonchus contortus hco-miR-5914-3p mature miRNA
• Sequence: 66 - UAGUGACUAGCAUAGGCAGAGG - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4