Stem-loop hco-mir-5911b

Accession

MI0020058

Description

Haemonchus contortus hco-mir-5911b precursor miRNA

Sequence

419 reads, 4.0 reads per million, 16 experiments

gaggguguugUAAGGUUGACUUGCUUAGAAGCUuguuuauucUUCUAAGCUCUUCACUCUUAUAgacaccuuca
(((((((((((((((.(((...(((((((((..........)))))))))...))).))))))).)))))))).

Structure

-        -       U   CUU         CUug 
 gagggugu ugUAAGG UGA   GCUUAGAAG    u
 |||||||| ||||||| |||   |||||||||     
 cuuccaca AUAUUCU ACU   CGAAUCUUc    u
a        g       C   UCU         uuau 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5911b-5p

• Accession: MIMAT0023386
• Description: Haemonchus contortus hco-miR-5911b-5p mature miRNA
• Sequence: 11 - UAAGGUUGACUUGCUUAGAAGCU - 33
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5911b-3p

• Accession: MIMAT0057973
• Description: Haemonchus contortus hco-miR-5911b-3p mature miRNA
• Sequence: 43 - UUCUAAGCUCUUCACUCUUAUA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4