Stem-loop hco-mir-7

Accession

MI0020059

Description

Haemonchus contortus hco-mir-7 precursor miRNA

Literature search

3 open access papers mention hco-mir-7
(6 sentences)

Sequence

5996 reads, 44.0 reads per million, 21 experiments

gguugccgaaUGGAAGACAGGAGAUUGCGUCGUugcacuuucaccucgCUGCAAUCCCCGUCUAUCCGAUcggcucacug
(((.(((((.((((((((.((.(((((((.((..(........)..)).))))))))).)))).)))).)))))..))).

Structure

-   -u     a    -    A  A       U  Uu cac 
 ggu  gccga UGGA AGAC GG GAUUGCG CG  g   u
 |||  ||||| |||| |||| || ||||||| ||  |    
 uca  cggcU GCCU UCUG CC CUAACGU gc  c   u
g   cu     A    A    C  -       C  uc acu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-7-5p

• Accession: MIMAT0023387
• Description: Haemonchus contortus hco-miR-7-5p mature miRNA
• Sequence: 11 - UGGAAGACAGGAGAUUGCGUCGU - 33
• Evidence: experimental ; Illumina [1]

Mature hco-miR-7-3p

• Accession: MIMAT0057974
• Description: Haemonchus contortus hco-miR-7-3p mature miRNA
• Sequence: 49 - CUGCAAUCCCCGUCUAUCCGAU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4