Stem-loop hco-mir-5919

Accession

MI0020064

Description

Haemonchus contortus hco-mir-5919 precursor miRNA

Sequence

cgcgacaguucaacuccucaaaccggugccaaaagccccauuaugagcggGUUUGGUUGCCGUUUUGAGGUguugacgagc
.((....((.((((.(((((((.(((((((((..(((((.......).)))))))).))))).))))))).))))))..))

Structure

c  gaca  u    u       c     -    aa    - au 
 gc    gu caac ccucaaa cggug ccaa  gccc c  u
 ||    || |||| ||||||| ||||| ||||  |||| |  a
 cg    ca guug GGAGUUU GCCGU GGUU  UGgg g  u
-  --ag  -    U       U     U    --    c ag 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5919

• Accession: MIMAT0023392
• Description: Haemonchus contortus hco-miR-5919 mature miRNA
• Sequence: 51 - GUUUGGUUGCCGUUUUGAGGU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4