Stem-loop hco-mir-5894b

Accession

MI0020071

Description

Haemonchus contortus hco-mir-5894b precursor miRNA

Literature search

1 open access papers mention hco-mir-5894b
(1 sentences)

Sequence

uauuuuuacuguugcuuaucagauuauagguuagcuauGCCUAUAUCUGAUGGUGUAGCggaaacgaga
........((((((((((((((((.((((((.......))))))))))))))).)))))))........

Structure

uauuuuua       -         u      ua 
        cuguugc uuaucagau auaggu  g
        ||||||| ||||||||| ||||||  c
        ggCGAUG GGUAGUCUA UAUCCG  u
agagcaaa       U         -      ua 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5894b

• Accession: MIMAT0023400
• Description: Haemonchus contortus hco-miR-5894b mature miRNA
• Sequence: 39 - GCCUAUAUCUGAUGGUGUAGC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4