Stem-loop hco-mir-1

Accession

MI0020072

Description

Haemonchus contortus hco-mir-1 precursor miRNA

Literature search

1 open access papers mention hco-mir-1
(2 sentences)

Sequence

cuugguaauccauacgcuucagacuucgugcuucuuugcauacccauacuguauuaggauaUGGAAUGUAAAGAAGUAUGUAGuuuggccauu
..(((....)))......(((((((.(((((((((((((((..(((((((......)).))))).))))))))))))))).))))))).....

Structure

cuugguaauccauacgcu       u               ac     -  gu 
                  ucagacu cgugcuucuuugcau  ccaua cu  a
                  ||||||| |||||||||||||||  ||||| ||   
                  gguuuGA GUAUGAAGAAAUGUA  GGUau gg  u
-------------uuacc       U               -A     a  au 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-1

• Accession: MIMAT0023401
• Description: Haemonchus contortus hco-miR-1 mature miRNA
• Sequence: 62 - UGGAAUGUAAAGAAGUAUGUAG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4