Stem-loop hco-mir-5925

Accession

MI0020075

Description

Haemonchus contortus hco-mir-5925 precursor miRNA

Sequence

14906 reads, 112.0 reads per million, 20 experiments

agcauaguccguacaaaaaaucUUCUUCCCGGGACCUCCAUAUCaaauuuugaucugAUAUGGAGUUCCUGGGGGGAUGAuuuuuuugggaagucccaaguu
...............(((((((.(((((((((((.((((((((((..........)))))))))).))))))))))).)))))))(((((....)))))...

Structure

--agcauaguccguaca       U           C          aauu 
                 aaaaauc UCUUCCCGGGA CUCCAUAUCa    u
                 ||||||| ||||||||||| ||||||||||     
                 uuuuuAG AGGGGGGUCCU GAGGUAUAgu    u
uugaacccugaaggguu       U           U          cuag 

Annotation confidence Medium

Genome context

Unknown

Mature hco-miR-5925-5p

• Accession: MIMAT0057980
• Description: Haemonchus contortus hco-miR-5925-5p mature miRNA
• Sequence: 23 - UUCUUCCCGGGACCUCCAUAUC - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5925-3p

• Accession: MIMAT0023405
• Description: Haemonchus contortus hco-miR-5925-3p mature miRNA
• Sequence: 58 - AUAUGGAGUUCCUGGGGGGAUGA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4