Stem-loop hco-mir-5926

Accession

MI0020076

Description

Haemonchus contortus hco-mir-5926 precursor miRNA

Sequence

1231 reads, 11.0 reads per million, 18 experiments

aagcuuuuguuuuggggaauuccguuCCGUUUCGUUCCACGGAGUGCCgcuccuggugaucuagUGGCACUCCGUGGAACGAAACGGAacgguuccacgauuauuaacga
......((((((((.((((..((((((((((((((((((((((((((((((...((....)))))))))))))))))))))))))))))))))))).))).....)))))

Structure

aagcuu     -----   g    uu                              ccu  u 
      uuguu     uug ggaa  ccguuCCGUUUCGUUCCACGGAGUGCCgcu   gg g
      |||||     ||| ||||  ||||||||||||||||||||||||||||||   ||  
      agcaa     agc ccuu  ggcaAGGCAAAGCAAGGUGCCUCACGGUga   uc a
------     uuauu   a    --                              ---  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5926-5p

• Accession: MIMAT0057981
• Description: Haemonchus contortus hco-miR-5926-5p mature miRNA
• Sequence: 27 - CCGUUUCGUUCCACGGAGUGCC - 48
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5926-3p

• Accession: MIMAT0023406
• Description: Haemonchus contortus hco-miR-5926-3p mature miRNA
• Sequence: 65 - UGGCACUCCGUGGAACGAAACGGA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4