Stem-loop hco-mir-307

Accession

MI0020077

Description

Haemonchus contortus hco-mir-307 precursor miRNA

Sequence

8563 reads, 72.0 reads per million, 19 experiments

uucacuuugggaccgugaacucUGCUUGCUCAGUCGGUUGUUCGAUGuuuacugucaUCACAACCUCCUUGAGUAAGUCGAgccaccguacccuuuggcaucuuuu
........(((((.(((..(((.((((((((((..((((((..((((........))))))))))...)))))))))).))).))).)).))).............

Structure

-----uucacuuu   -  c   aa   U          -UC      UC    uuu 
             ggg ac gug  cuc GCUUGCUCAG   GGUUGU  GAUG   a
             ||| || |||  ||| ||||||||||   ||||||  ||||    
             ccc ug cac  gAG UGAAUGAGUU   CCAACA  CUac   c
uuuucuacgguuu   a  c   -c   C          CCU      --    ugu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-307-5p

• Accession: MIMAT0057982
• Description: Haemonchus contortus hco-miR-307-5p mature miRNA
• Sequence: 23 - UGCUUGCUCAGUCGGUUGUUCGAUG - 47
• Evidence: experimental ; Illumina [1]

Mature hco-miR-307-3p

• Accession: MIMAT0023407
• Description: Haemonchus contortus hco-miR-307-3p mature miRNA
• Sequence: 58 - UCACAACCUCCUUGAGUAAGUCGA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4