Stem-loop hco-mir-993

Accession

MI0020082

Description

Haemonchus contortus hco-mir-993 precursor miRNA

Sequence

1890587 reads, 14278.0 reads per million, 21 experiments

cauuuucugguugauaaucgucCUACCUGAUAGUACGAGAUUGUUccuauaucgaaaUAAGCUCGUCGCUACAGGCAGAAugaaagaaagccauugaucggucc
.......(((((.....((((.((.((((.(((((((((.(((((.(......).))))).))))).)))))))).)).)))).....)))))...........

Structure

----cauuuuc     gauaa    c  A    A    -     A     c ua 
           ugguu     ucgu CU CCUG UAGU ACGAG UUGUU c  u
           |||||     |||| || |||| |||| ||||| ||||| |   
           accga     aguA GA GGAC AUCG UGCUC AAUaa g  a
ccuggcuaguu     aagaa    A  C    -    C     G     a cu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-993-5p

• Accession: MIMAT0057984
• Description: Haemonchus contortus hco-miR-993-5p mature miRNA
• Sequence: 23 - CUACCUGAUAGUACGAGAUUGUU - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-993-3p

• Accession: MIMAT0023413
• Description: Haemonchus contortus hco-miR-993-3p mature miRNA
• Sequence: 58 - UAAGCUCGUCGCUACAGGCAGAA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4