Stem-loop hco-mir-2

Accession

MI0020084

Description

Haemonchus contortus hco-mir-2 precursor miRNA

Literature search

4 open access papers mention hco-mir-2
(6 sentences)

Sequence

185612 reads, 1278.0 reads per million, 21 experiments

cuguccucaacaccggcacggcaCGUCAAAGUGGUGGGUGAUUUGucgacuugcucaUAUCACAGCCAGCUUUGAUGUGCuguaaugggcaaaggggcgucucuc
.((((((.....(((..((((((((((((((((((..(((((.((..........)).))))).)))).))))))))))))))..))).....))))))......

Structure

-----c      caaca   gc              -    GG     U  ucga 
      uguccu     ccg  acggcaCGUCAAAG UGGU  GUGAU UG    c
      ||||||     |||  |||||||||||||| ||||  ||||| ||     
      gcgggg     ggu  uguCGUGUAGUUUC ACCG  CACUA ac    u
cucucu      aaacg   aa              G    -A     U  ucgu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-2-5p

• Accession: MIMAT0057985
• Description: Haemonchus contortus hco-miR-2-5p mature miRNA
• Sequence: 24 - CGUCAAAGUGGUGGGUGAUUUG - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-2-3p

• Accession: MIMAT0023415
• Description: Haemonchus contortus hco-miR-2-3p mature miRNA
• Sequence: 58 - UAUCACAGCCAGCUUUGAUGUGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4