Stem-loop hco-mir-5930

Accession

MI0020085

Description

Haemonchus contortus hco-mir-5930 precursor miRNA

Sequence

caguucugagaccgauguuaagCAGGGGCGACGUAGAACACAUGCAcgugaaugcaugaguugcuagucgcccgacaccacuagacgacgacagcaacc
..((((((....((.((((.((...(((((((.((((((.((((((......)))))).))).)))))))))).......)).)))).)).))).))).

Structure

ca   -   agac  a    a  ----CAG       G   -   A      cg 
  guu cug    cg uguu ag       GGGCGAC UAG AAC CAUGCA  u
  ||| |||    || |||| ||       ||||||| ||| ||| ||||||   
  caa gac    gc gcag uc       cccgcug auc uug guacgu  g
-c   c   ---a  a    a  accacag       -   g   a      aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5930

• Accession: MIMAT0023416
• Description: Haemonchus contortus hco-miR-5930 mature miRNA
• Sequence: 23 - CAGGGGCGACGUAGAACACAUGCA - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4