Stem-loop hco-mir-5932

Accession

MI0020093

Description

Haemonchus contortus hco-mir-5932 precursor miRNA

Sequence

2169 reads, 21.0 reads per million, 18 experiments

acgacccuacguagaccccgucucagugUCUCUAACCGUUGUCAAAAUCAgcgagauugcaggAUUUUGGUCGGUGGUUAGAGUCAcugagaaggugacgaucauugcaa
.........(((..(((...((((((((.((((((((((((((((((((.(((....)))..)))))))).)))))))))))).)))))))).))).)))..........

Structure

-acgacccua   ag   ccg        U            -        -A   a 
          cgu  acc   ucucagug CUCUAACCGUUG UCAAAAUC  gcg g
          |||  |||   |||||||| |||||||||||| ||||||||  |||  
          gca  ugg   agagucAC GAGAUUGGUGGC GGUUUUAg  cgu a
aacguuacua   -g   --a        U            U        ga   u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5932-5p

• Accession: MIMAT0057989
• Description: Haemonchus contortus hco-miR-5932-5p mature miRNA
• Sequence: 29 - UCUCUAACCGUUGUCAAAAUCA - 50
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5932-3p

• Accession: MIMAT0023424
• Description: Haemonchus contortus hco-miR-5932-3p mature miRNA
• Sequence: 64 - AUUUUGGUCGGUGGUUAGAGUCA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4