Stem-loop hco-mir-5934

Accession

MI0020095

Description

Haemonchus contortus hco-mir-5934 precursor miRNA

Sequence

ccuacucccagugcgaucccacugcgcuuuugauccgacuaacgagcuuccuuuucgUUAGUCUGAUCAGAAGCGUGGGgggagcuggggacugcucgaggc
.....(((((((....((((.((((((((((((((.((((((((((.......)))))))))).)))))))))))))).)))))))))))............

Structure

-------ccuac       gcga    a              c          cu 
            ucccagu    uccc cugcgcuuuugauc gacuaacgag  u
            |||||||    |||| |||||||||||||| ||||||||||  c
            ggggucg    aggg GGUGCGAAGACUAG CUGAUUgcuu  c
cggagcucguca       ----    G              U          uu 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5934

• Accession: MIMAT0023426
• Description: Haemonchus contortus hco-miR-5934 mature miRNA
• Sequence: 58 - UUAGUCUGAUCAGAAGCGUGGG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4