Stem-loop hco-mir-5935

Accession

MI0020096

Description

Haemonchus contortus hco-mir-5935 precursor miRNA

Sequence

gcgaaacuaaucgagagggccagauugaugccacauuacgaccacucaguugaaaaucaugugAGGGAUCGUAAUGUGGCAUCGAucuggcccuauuuauuuccucccaa
.(((......)))..((((((((((((((((((((((((((((.((((..(((...)))..)))))).))))))))))))))))))))))))))................

Structure

-gcgaaacuaaucgag                          -  a    gu   a 
                agggccagauugaugccacauuacga cc cuca  uga  
                |||||||||||||||||||||||||| || ||||  ||| a
                ucccggucuAGCUACGGUGUAAUGCU GG GAgu  acu  
aacccuccuuuauuua                          A  -    gu   a 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5935

• Accession: MIMAT0023427
• Description: Haemonchus contortus hco-miR-5935 mature miRNA
• Sequence: 64 - AGGGAUCGUAAUGUGGCAUCGA - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4