Stem-loop hco-mir-40c

Accession

MI0020098

Description

Haemonchus contortus hco-mir-40c precursor miRNA

Sequence

caacaccuagcgagauggaaucaccucagaauaaccuuggugacgcugauuaagacuUCACCGGGAGUUCUGUGGUGAuaccuacuuuauuccuccaaac
...........(((..((.((((((.((((((...((((((((.(((.....)).).)))))))).)))))).)))))).))..))).............

Structure

--caacaccuagc   au  a      u      aac        c -  g 
             gag  gg aucacc cagaau   cuugguga g cu a
             |||  || |||||| ||||||   |||||||| | || u
             uuc  cc uAGUGG GUCUUG   GGGCCACU c ga u
caaaccuccuuau   au  a      U      --A        u a  a 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-40c

• Accession: MIMAT0023429
• Description: Haemonchus contortus hco-miR-40c mature miRNA
• Sequence: 58 - UCACCGGGAGUUCUGUGGUGA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4