Stem-loop hco-mir-40d

Accession

MI0020099

Description

Haemonchus contortus hco-mir-40d precursor miRNA

Sequence

642 reads, 9.0 reads per million, 20 experiments

guacgcuacuguaucuggcguuCGUUGUAGGACCCCCUGUGAGGcuuuaugggacuUCACCGGGUAUCUUGCAGCGGGugcuuggacagacaguauggcuc
....((((((((.(((((((((((((((((((..(((.(((((((((...))).)))))).)))..))))))))))))))).))))...)))))..)))..

Structure

guac   --     --a    -               CC   U      -   u 
    gcu  acugu   ucug gcguuCGUUGUAGGA  CCC GUGAGG cuu  
    |||  |||||   |||| |||||||||||||||  ||| |||||| ||| a
    cgg  ugaca   aggu cguGGGCGACGUUCU  GGG CACUuc ggg  
--cu   ua     gac    u               AU   C      a   u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-40d-5p

• Accession: MIMAT0057991
• Description: Haemonchus contortus hco-miR-40d-5p mature miRNA
• Sequence: 23 - CGUUGUAGGACCCCCUGUGAGG - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-40d-3p

• Accession: MIMAT0023430
• Description: Haemonchus contortus hco-miR-40d-3p mature miRNA
• Sequence: 57 - UCACCGGGUAUCUUGCAGCGGG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4