Stem-loop hco-mir-5936

Accession

MI0020100

Description

Haemonchus contortus hco-mir-5936 precursor miRNA

Sequence

uaauuucuucaauagugagcaggaagcgaaaaggagcuuucauaguaucaaccuccugacgcugAUACUGUGAAAGCUCCUUUGUCccuuccugcucacuauuucacauu
..........((((((((((((((((.(((((((((((((((((((((((.(........).))))))))))))))))))))).)).)))))))))))))))).......

Structure

uaauuucuuc                c  -                     a cuc 
          aauagugagcaggaag ga aaaggagcuuucauaguauca c   c
          |||||||||||||||| || ||||||||||||||||||||| |    
          uuaucacucguccuuc CU UUUCCUCGAAAGUGUCAUAgu g   u
---uuacacu                c  G                     c cag 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5936

• Accession: MIMAT0023431
• Description: Haemonchus contortus hco-miR-5936 mature miRNA
• Sequence: 65 - AUACUGUGAAAGCUCCUUUGUC - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4