Stem-loop hco-mir-5937

Accession

MI0020101

Description

Haemonchus contortus hco-mir-5937 precursor miRNA

Sequence

100 reads, 2.0 reads per million, 15 experiments

uuaacgacaaugacugcuuuCAUAGUCCACGAUUUGGCgagcgagcgaccggucguucgcccAAUCGUGGACUAUGGAAGCAGCcaaugauuggcaagauaugcuaaccc
.......((.((.(((((((((((((((((((((.(((((((((.(....).))))))))).))))))))))))))))))))).)).)).((((((.....))))))...

Structure

--------------uuaacga  a  a                     U         g g 
                     ca ug cugcuuuCAUAGUCCACGAUU GGCgagcga c a
                     || || ||||||||||||||||||||| ||||||||| |  
                     gu ac GACGAAGGUAUCAGGUGCUAA ccgcuugcu g c
cccaaucguauagaacgguua  a  C                     c         g c 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5937-5p

• Accession: MIMAT0057992
• Description: Haemonchus contortus hco-miR-5937-5p mature miRNA
• Sequence: 21 - CAUAGUCCACGAUUUGGC - 38
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5937-3p

• Accession: MIMAT0023432
• Description: Haemonchus contortus hco-miR-5937-3p mature miRNA
• Sequence: 63 - AAUCGUGGACUAUGGAAGCAGC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4