Stem-loop hco-mir-5938

Accession

MI0020102

Description

Haemonchus contortus hco-mir-5938 precursor miRNA

Sequence

2136 reads, 37.0 reads per million, 21 experiments

acgaagaagggaucgguuccccuCGCCGACUUUACCAAGCUUGGCAgccuuagauagauugUCGGGUAUGGAUGUCGGCAUAaaucauugucagauccacgaacuucc
..((((..((((((((....))..((((((....(((.(((((((((.((.....)).))))))))).)))..))))))..............))))).)...)))).

Structure

ac    -aa -     ----gguuccccuC      UUUA   A         c  u 
  gaag   g ggauc              GCCGAC    CCA GCUUGGCAg cu a
  ||||   | |||||              ||||||    ||| ||||||||| || g
  cuuc   c ccuag              CGGCUG    GGU UGGGCUguu ga a
-c    aag a     acuguuacuaaAUA      --UA   A         a  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5938-5p

• Accession: MIMAT0023433
• Description: Haemonchus contortus hco-miR-5938-5p mature miRNA
• Sequence: 24 - CGCCGACUUUACCAAGCUUGGCA - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5938-3p

• Accession: MIMAT0057993
• Description: Haemonchus contortus hco-miR-5938-3p mature miRNA
• Sequence: 62 - UCGGGUAUGGAUGUCGGCAUA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4