Stem-loop hco-mir-5939

Accession

MI0020103

Description

Haemonchus contortus hco-mir-5939 precursor miRNA

Sequence

4043 reads, 128.0 reads per million, 21 experiments

caccagaugggcuccugggcucCAACAUAUGGCGAUCGCAGCAGGauucgugccUGCCGUGGUCGCCAUGUGUUGGAauccacguguuccugcuucucgcuc
...(((..((((.(.((((.(((((((((((((((((((.(((((.......))))).))))))))))))))))))).)))).).)))))))..........

Structure

-------cac   au    u c    c                   A     au 
          cag  gggc c uggg ucCAACAUAUGGCGAUCGC GCAGG  u
          |||  |||| | |||| ||||||||||||||||||| |||||  c
          guc  cuug g accu AGGUUGUGUACCGCUGGUG CGUcc  g
cucgcucuuc   --    u c    a                   C     gu 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5939-5p

• Accession: MIMAT0057994
• Description: Haemonchus contortus hco-miR-5939-5p mature miRNA
• Sequence: 23 - CAACAUAUGGCGAUCGCAGCAGG - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5939-3p

• Accession: MIMAT0023434
• Description: Haemonchus contortus hco-miR-5939-3p mature miRNA
• Sequence: 55 - UGCCGUGGUCGCCAUGUGUUGGA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4