Stem-loop hco-mir-63b

Accession

MI0020109

Description

Haemonchus contortus hco-mir-63b precursor miRNA

Literature search

1 open access papers mention hco-mir-63b
(1 sentences)

Sequence

702916 reads, 5561.0 reads per million, 21 experiments

cucguccucacUCCGAUUCGCCGGUAGUCAUCGUcaucggugagcaCUAUGACACUGUCGCGAAUUGGGGugauuagagc
(((....((((((((((((((((((.(((((.((..((...))..)).)))))))))..))))))))))))))...))).

Structure

-   gucc              --    A     C  ca  g 
 cuc    ucacUCCGAUUCGC  CGGU GUCAU GU  uc  
 |||    ||||||||||||||  |||| ||||| ||  || g
 gag    aguGGGGUUAAGCG  GUCA CAGUA Ca  ag  
c   -auu              CU    -     U  cg  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-63b-5p

• Accession: MIMAT0057997
• Description: Haemonchus contortus hco-miR-63b-5p mature miRNA
• Sequence: 12 - UCCGAUUCGCCGGUAGUCAUCGU - 34
• Evidence: experimental ; Illumina [1]

Mature hco-miR-63b-3p

• Accession: MIMAT0023440
• Description: Haemonchus contortus hco-miR-63b-3p mature miRNA
• Sequence: 47 - CUAUGACACUGUCGCGAAUUGGGG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4