Stem-loop hco-mir-5946a

Accession

MI0020116

Description

Haemonchus contortus hco-mir-5946a precursor miRNA

Sequence

ucauccucucAGGAUUUACACCUGUUGUCGUGAGcaugcggcgucacgacccucgcgugaaaucaagagagggguu
...(((((((..(((((.(((.((..(((((((((.....)).)))))))...)).))))))))..)))))))...

Structure

uca       AG     A   C  -UU       -  a 
   uccucuc  GAUUU CAC UG   GUCGUGA Gc u
   |||||||  ||||| ||| ||   ||||||| || g
   gggagag  cuaaa gug gc   cagcacu cg c
uug       aa     -   c  ucc       g  g 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5946a

• Accession: MIMAT0023448
• Description: Haemonchus contortus hco-miR-5946a mature miRNA
• Sequence: 11 - AGGAUUUACACCUGUUGUCGUGAG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4