Stem-loop hco-mir-5948

Accession

MI0020118

Description

Haemonchus contortus hco-mir-5948 precursor miRNA

Sequence

ucgauauucggcuacggguuuuggguauauuuaucuuuuguuacgauaGAUCAAUAUACCCAAGGCUCGGAAacgaugucgg
.((((((.((....(((((((((((((((((.((((.((.....)).)))).)))))))))))))))))....)))))))).

Structure

u      u  gcua                 u    u  g 
 cgauau cg    cggguuuuggguauauu aucu uu u
 |||||| ||    ||||||||||||||||| |||| || u
 gcugua gc    GCUCGGAACCCAUAUAA UAGa ag a
g      -  aAAG                 C    u  c 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5948

• Accession: MIMAT0023450
• Description: Haemonchus contortus hco-miR-5948 mature miRNA
• Sequence: 49 - GAUCAAUAUACCCAAGGCUCGGAA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4