Stem-loop hco-mir-5949

Accession

MI0020119

Description

Haemonchus contortus hco-mir-5949 precursor miRNA

Sequence

gcgcgucgauuaguauguacgcgguguagugacagcccagauguaaugaaguCGUGGGCUUCACGACACUGGGggcgacaacg
....((((...........(.((((((.((((.(((((((((........))).)))))))))).)))))).)..))))....

Structure

gcgc    auuaguaugua g      a    c      -   gua 
    gucg           c cggugu guga agccca gau   a
    ||||           | |||||| |||| |||||| |||    
    cagc           G GUCACA CACU UCGGGU Cug   u
gcaa    ---------gg G      G    -      G   aag 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5949

• Accession: MIMAT0023451
• Description: Haemonchus contortus hco-miR-5949 mature miRNA
• Sequence: 53 - CGUGGGCUUCACGACACUGGG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4