Stem-loop hco-mir-5950

Accession

MI0020120

Description

Haemonchus contortus hco-mir-5950 precursor miRNA

Sequence

uggugguugaugucgauucagucguugucgucggcgucguggugaccgaugUGGAUUCAGUUGUUGUAGUCGGCgucguggugg
........(((((((((((((...(((..(((.((((((.(....))))))).))).)))...))).)))))))))).......

Structure

uggugguu          -   ucg   uc   g      u g 
        gaugucgauu cag   uug  guc gcgucg g u
        |||||||||| |||   |||  ||| |||||| |  
        cugCGGCUGA GUU   GAC  UAG Uguagc c g
-gguggug          U   GUU   -U   G      - a 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5950

• Accession: MIMAT0023452
• Description: Haemonchus contortus hco-miR-5950 mature miRNA
• Sequence: 52 - UGGAUUCAGUUGUUGUAGUCGGC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4