Stem-loop hco-mir-5952

Accession

MI0020122

Description

Haemonchus contortus hco-mir-5952 precursor miRNA

Sequence

ggcgaauuucugaugcauucuuucaaagagcuggagauaucauucuucacugcugcgUGAGGGACUGGUCGCGGCAGAAUAcggggcgcac
.(((...(((((.((((((((((((...(((((((((......))))))..)))...)))))))...)).))).))))).......)))..

Structure

-g   ----aau     a   -  ---       aag   --      ua 
  gcg       uucug ugc au   ucuuuca   agc  uggaga  u
  |||       ||||| ||| ||   |||||||   |||  ||||||   
  cgc       AAGAC GCG UG   AGGGAGU   ucg  acuucu  c
ca   ggggcAU     G   C  GUC       gcg   uc      ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5952

• Accession: MIMAT0023454
• Description: Haemonchus contortus hco-miR-5952 mature miRNA
• Sequence: 58 - UGAGGGACUGGUCGCGGCAGAAUA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4