Stem-loop hco-mir-5953

Accession

MI0020123

Description

Haemonchus contortus hco-mir-5953 precursor miRNA

Sequence

cuacgccaauugcaucgggacgcacacgucacacgcagggguguggugcgAUUCGUGCGAUUCUGGAUGCGugcggcaaau
....(((...((((((.((((((((.(((..(((((....)))))..)))....)))))..))).))))))...)))....

Structure

cuac   aau      g   --     ---a   ca     a 
    gcc   ugcauc gga  cgcac    cgu  cacgc g
    |||   |||||| |||  |||||    |||  |||||  
    cgg   GCGUAG UCU  GCGUG    gcg  gugug g
uaaa   cgu      G   UA     CUUA   ug     g 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5953

• Accession: MIMAT0023455
• Description: Haemonchus contortus hco-miR-5953 mature miRNA
• Sequence: 51 - AUUCGUGCGAUUCUGGAUGCG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4