Stem-loop hco-mir-5954

Accession

MI0020125

Description

Haemonchus contortus hco-mir-5954 precursor miRNA

Sequence

auugucgguauucucgucgagaaaauggcaauacacuucagaagugacgGUCAUUUUUUCAGGACAGAGUugccagaacg
......((((((((.((((((((((((((....(((((...)))))...)))))))))))..))))))).))))......

Structure

auuguc    -    c   --           aaua     c 
      ggua uucu guc  gagaaaauggc    cacuu  
      |||| |||| |||  |||||||||||    ||||| a
      ccgu GAGA CAG  CUUUUUUACUG    gugaa  
gcaaga    U    -   GA           -gca     g 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5954

• Accession: MIMAT0023457
• Description: Haemonchus contortus hco-miR-5954 mature miRNA
• Sequence: 50 - GUCAUUUUUUCAGGACAGAGU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4