Stem-loop hco-mir-5956

Accession

MI0020127

Description

Haemonchus contortus hco-mir-5956 precursor miRNA

Sequence

cugccccuugugguggaaguccaguccugccacauaccgucaaugucuuaaUGUUGCGGCCUGUACUUCUACCAAauucgggcga
.(((((....((((((((((.(((.((.((.((((...............)))).)))).))).)))))))))).....))))).

Structure

c     -cuug          c   u  u  c    accguc 
 ugccc     ugguggaagu cag cc gc acau      a
 |||||     |||||||||| ||| || || ||||      a
 gcggg     ACCAUCUUCA GUC GG CG UGUa      u
a     cuuaA          U   C  -  U    auucug 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5956

• Accession: MIMAT0023459
• Description: Haemonchus contortus hco-miR-5956 mature miRNA
• Sequence: 52 - UGUUGCGGCCUGUACUUCUACCAA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4