Stem-loop hco-mir-5958

Accession

MI0020129

Description

Haemonchus contortus hco-mir-5958 precursor miRNA

Sequence

uuuugcuugguucaguacccgacuacauaucuaugaaaaagaUAUAGCCGGGUACUUUACCAGCACugcagcaccu
...((((.(((..((((((((.(((..(((((.......)))))))).))))))))..)))))))...........

Structure

--------uuu    u   uc        a   ca     au 
           ugcu ggu  aguacccg cua  uaucu  g
           |||| |||  |||||||| |||  |||||  a
           ACGA CCA  UCAUGGGC GAU  AUaga  a
uccacgacguC    -   UU        C   --     aa 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5958

• Accession: MIMAT0023461
• Description: Haemonchus contortus hco-miR-5958 mature miRNA
• Sequence: 43 - UAUAGCCGGGUACUUUACCAGCAC - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4