Stem-loop hco-mir-5959

Accession

MI0020131

Description

Haemonchus contortus hco-mir-5959 precursor miRNA

Sequence

ccccucuccgcuagaccuuuggcccuugacguucgagaaucagaucaauggacucUGCUUUUCUAACGCUCAAGGGCUAaagaggaaacuggcgaacugugc
........((((((.((((((((((((((((((.(((((.((((((....)).)))).))))).)))).))))))))))..))))...))))))........

Structure

ccccucuc      --a    --          -    c     u    -  a 
        cgcuag   ccuu  uggcccuuga cguu gagaa caga uc a
        ||||||   ||||  |||||||||| |||| ||||| |||| ||  
        gcgguc   ggag  AUCGGGAACU GCAA CUUUU GUcu ag u
cgugucaa      aaa    aa          C    U     C    c  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5959

• Accession: MIMAT0023463
• Description: Haemonchus contortus hco-miR-5959 mature miRNA
• Sequence: 56 - UGCUUUUCUAACGCUCAAGGGCUA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4