Stem-loop hco-mir-5963

Accession

MI0020135

Description

Haemonchus contortus hco-mir-5963 precursor miRNA

Sequence

uuuaaaaaaaacuccguuucacuucauuuauuagaaaugauggcguugcgagcuuuugauggccggcccacgccaauaagccuguccaaaagCUAUGGCAGAGGGGCGACCAUCgaauuuucaaaguguuccccucaaca
.........(((.(((..(((.(((........))).)))))).)))..(((..((((((((.((.(((.(((((...(((.(......).))).)))).).))).)).))))))))..)))..................

Structure

uuuaaaaaaaacuccguuucacuucauuuauuagaaaugauggcguugc   cu        c  g   a -    aua   c gu 
                                                 gag  uuugaugg cg ccc c gcca   agc u  c
                                                 |||  |||||||| || ||| | ||||   ||| |   
                                                 cuu  aagCUACC GC GGG G CGGU   UCg a  c
-------------------------------acaacuccccuugugaaa   uu        A  G   A A    --A   a aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5963

• Accession: MIMAT0023467
• Description: Haemonchus contortus hco-miR-5963 mature miRNA
• Sequence: 93 - CUAUGGCAGAGGGGCGACCAUC - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4