Stem-loop hco-mir-60

Accession

MI0020136

Description

Haemonchus contortus hco-mir-60 precursor miRNA

Literature search

1 open access papers mention hco-mir-60
(2 sentences)

Sequence

gauggccgcaacgcuguuccugagcuggaaacugucauaaaauccuuucugagcgaUAUUAUGCACAUUUUCUGGUUCAAgacauguucggccgacccacag
...(((((.((((.((((..(((((((((((.((((((((.((((((...))).))).))))).))).))))))))))).))))))))))))).........

Structure

------gau     c    c    cc           c   -     a   -   u 
         ggccg aacg uguu  ugagcuggaaa ugu cauaa auc cuu  
         ||||| |||| ||||  ||||||||||| ||| ||||| ||| ||| c
         ccggc uugu acag  ACUUGGUCUUU ACA GUAUU Uag gag  
gacacccag     -    -    -A           U   C     A   c   u 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-60

• Accession: MIMAT0023468
• Description: Haemonchus contortus hco-miR-60 mature miRNA
• Sequence: 57 - UAUUAUGCACAUUUUCUGGUUCAA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4