Stem-loop hco-mir-60

Accession

MI0020136

Description

Haemonchus contortus hco-mir-60 precursor miRNA

Literature search

3 open access papers mention hco-mir-60
(4 sentences)

Sequence

32561 reads, 1118.0 reads per million, 21 experiments

gauggccgcaacgcuguuccugAGCUGGAAACUGUCAUAAAAUCcuuucugagcgaUAUUAUGCACAUUUUCUGGUUCAAgacauguucggccgacccacag
...(((((.((((.((((..(((((((((((.((((((((.((((((...))).))).))))).))).))))))))))).))))))))))))).........

Structure

------gau     c    c    cc           C   -     A   -   u 
         ggccg aacg uguu  ugAGCUGGAAA UGU CAUAA AUC cuu  
         ||||| |||| ||||  ||||||||||| ||| ||||| ||| ||| c
         ccggc uugu acag  ACUUGGUCUUU ACA GUAUU Uag gag  
gacacccag     -    -    -A           U   C     A   c   u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-60-5p

• Accession: MIMAT0058003
• Description: Haemonchus contortus hco-miR-60-5p mature miRNA
• Sequence: 23 - AGCUGGAAACUGUCAUAAAAUC - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-60-3p

• Accession: MIMAT0023468
• Description: Haemonchus contortus hco-miR-60-3p mature miRNA
• Sequence: 57 - UAUUAUGCACAUUUUCUGGUUCAA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4