Stem-loop hco-mir-5946c

Accession

MI0020139

Description

Haemonchus contortus hco-mir-5946c precursor miRNA

Sequence

uaugcgaaauauuauuuaaguuuuccucuUGAGCUUUACACCUGUUGUCAUGAgcauauagcgucaugaccuggugugguuuuggagaggaaaacgaaaaucaccacuaa
.............((((..(((((((((((.((..(((((((....(((((((((.....)).)))))))..)))))))..)).)))))))))))..)))).........

Structure

uaugcgaaauauu    aa           G  CU       UGUU       -  a 
             auuu  guuuuccucuU AG  UUACACC    GUCAUGA gc u
             ||||  ||||||||||| ||  |||||||    ||||||| || a
             uaaa  caaaaggagag uu  ggugugg    caguacu cg u
----aaucaccac    ag           g  uu       --uc       g  a 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5946c

• Accession: MIMAT0023471
• Description: Haemonchus contortus hco-miR-5946c mature miRNA
• Sequence: 30 - UGAGCUUUACACCUGUUGUCAUGA - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4