Stem-loop hco-mir-5966

Accession

MI0020141

Description

Haemonchus contortus hco-mir-5966 precursor miRNA

Sequence

guuguguguuuguugugaaugcgugaggauucucaaguagagguuuuacuauaaUCUCUACCUAGCAAUCCUCACGUAuucacaacaaacgguuaugaga
......(((((((((((((((((((((((((((...(((((((((.......)))))))))..)).))))))))))))))))))))))))).........

Structure

---guugug                         -  caa         uu 
         uguuuguugugaaugcgugaggauu cu   guagagguu  a
         ||||||||||||||||||||||||| ||   |||||||||  c
         gcaaacaacacuuAUGCACUCCUAA GA   CAUCUCUaa  u
agaguauug                         C  -UC         ua 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5966

• Accession: MIMAT0023473
• Description: Haemonchus contortus hco-miR-5966 mature miRNA
• Sequence: 55 - UCUCUACCUAGCAAUCCUCACGUA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4