Stem-loop hco-mir-5968

Accession

MI0020143

Description

Haemonchus contortus hco-mir-5968 precursor miRNA

Sequence

accgcggcggcugucugaaaguuggcugcugugaguucgucgggaaauacugaaguaugucugcucacaugugaUCAUACUACAGUAGUUCUUGACGAauuuacagcgguccccacucacac
...((....))....((..(((.(((((((((((((((((((((((.(((((.((((((((.((......)))).)))))).))))).)))))))))))))))))))))))...)))..)).

Structure

accgcggcggcuguc  aa   --u                       a     a      -  u  uc 
               ug  agu   ggcugcugugaguucgucgggaa uacug aguaug uc gc  a
               ||  |||   ||||||||||||||||||||||| ||||| |||||| || ||   
               ac  uca   cuggcgacauuuaAGCAGUUCUU AUGAC UCAUAC ag ug  c
--------------c  ac   ccc                       G     A      U  -  ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5968

• Accession: MIMAT0023475
• Description: Haemonchus contortus hco-miR-5968 mature miRNA
• Sequence: 75 - UCAUACUACAGUAGUUCUUGACGA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4