Stem-loop hco-mir-5969

Accession

MI0020144

Description

Haemonchus contortus hco-mir-5969 precursor miRNA

Sequence

aaaaaacucauaugggagguggacacauaacauaagccuucuuauuauauuuuacuauaagaaGGCUUCAUAUUAUGUGUCcaccuuugaguucccaucaggu
....((((((.....(((((((((((((((.((((((((((((((...........)))))))))))).)).))))))))))))))))))))).((....)).

Structure

------aaaa      uaugg               c  -            uaua 
          aacuca     gagguggacacauaa au aagccuucuuau    u
          ||||||     ||||||||||||||| || ||||||||||||    u
          uugagu     uuccacCUGUGUAUU UA UUCGGaagaaua    u
uggacuaccc      -----               A  C            ucau 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5969

• Accession: MIMAT0023476
• Description: Haemonchus contortus hco-miR-5969 mature miRNA
• Sequence: 64 - GGCUUCAUAUUAUGUGUC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4